PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v2258260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 315aa    MW: 33518.9 Da    PI: 7.2872
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v2258260.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.53.3e-3364121359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      +v+YkeClkNh aslGgha+DGCgEfmps++++  +++++kCaACgCHRnFHRre+ee
  Lj5g3v2258260.1  64 TVTYKECLKNHVASLGGHALDGCGEFMPSPTATaDDPSSIKCAACGCHRNFHRREPEE 121
                      699***************************999889******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2265118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2765119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.5E-3066118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5467118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.8E-30187257IPR009057Homeodomain-like
SuperFamilySSF466894.78E-19187257IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-26196253IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEVLTTATNN ITSTAKSPEP ETETPTRIQQ PGNVNATAKP LSFSNGVLKR HHPPAPHANH  60
SPVTVTYKEC LKNHVASLGG HALDGCGEFM PSPTATADDP SSIKCAACGC HRNFHRREPE  120
EPPITAAHHV FEYQPHHRHH PPPPVPFNRS PNSASPPPIS SYPSAPHMLL ALSGAGLPVP  180
PENTAAPTQT PGSDSRKRFR TKFTPGQKEK MLEFAERVGW KMQKRDEDLV MEFCNEVGVD  240
RGVLKVWMHN NKNTFGKRDH AAANGGAGGG DDDGAGGGER AINGNGNGSA ASQDPNQYEN  300
DSGTNGATNG SSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-221952541675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.128441e-120cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105710.0AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence.
GenBankAP0105720.0AP010572.1 Lotus japonicus genomic DNA, clone: LjT38M11, TM1877, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511481.11e-108PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LXG07e-76ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLI1LWK41e-107I1LWK4_SOYBN; Uncharacterized protein
STRINGGLYMA13G05420.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-73homeobox protein 34